1. Sugino M, Mori F, Tanaka M, Kotani K, Jimbo Y:
    Augmented reality brain-computer interface with spatial awareness,
    IEEJ Transactions on Electrical and Electronic Engineering, 17, 1820-1822, 2022
  2. Watanabe M, Kotani K, Jimbo, Y:
    High-speed liquid crystal display simulation using parallel reservoir computing approach,
    Japanese Journal of Applied Physics 61 087001, 2022
  3. Takahiro Asahina, Kenta Shimba, Kiyoshi Kotani, Yasuhiko Jimbo,
    Observing cell assemblies from spike train recordings based on the biological basis of synaptic connectivity,
    IEEE Transaction on Biomedical Engineering, 69 1524-1532, 2022
  4. Nishi H*, Mizuno S, Fujino K, Loe, I. A, Wang Y, Ishide T, Jimbo Y, Nangaku M, Kotani K*:
    Motion-capture technique-based interface screen displaying real-time probe position and angle in kidney ultrasonography,
    Clinical and Experimental Nephrology 26, 735–740 2022
    *Equal contribution
  5. Chang CH, Furukawa T, Asahina T, Shimba K, Kotani K, Jimbo Y:
    Coupling of in vitro neocortical-hippocampal coculture bursts induces different spike rhythms in individual networks,
    Frontiers in Neuroscience In press
  6. Shimba K, Asahina T, Sakai K, Kotani K, Jimbo Y:
    Recording Saltatory Conduction along Sensory Axons Using a High-Density Microelectrode Array,
    Frontiers in Neuroscience 16:854637.2022


  1. Moriya, F., Shimba K, Kotani, K., Jimbo, Y.
    Modulation of dynamics in a pre-existing hippocampal network by neural stem cells on a microelectrode array,
    J. Neural Eng. 18, 0460e2, 2021.
  2. Zheng T., Kotani K., Jimbo Y.:
    Distinct Effects of Heterogeneity and Noise on Gamma Oscillation in a Model of Neuronal Network with Different Reversal Potential,
    Scientific Reports 11, 12960, 2021
  3. Noyama H, Yoshikai Y, Kotani K, Jimbo Y.
    Mathematical analysis of multiple spike time series synchronized in phase with collective theta wave using neural cell model.
    Electron Comm Jpn. 2021;104:95–102.(野山ら2020年の翻訳版)
  4. Loe, I. A., Nakao H, Jimbo Y., Kotani K.
    Phase-reduction for synchronization of oscillating flow by perturbation on surrounding structure
    Journal of Fluid Mechanics 911, R2, 2021
  5. Kotani K, Akao A, Chiba H,
    Bifurcation of the neuronal population dynamics of the modified theta model: transition to macroscopic gamma oscillation
    Physica D 416, 132789, 2021
  6. Shuya Mizuno, Fuyuki Oneyama, Masato Sugino, Hiroaki Semba, Yasuhiko Jimbo, Kiyoahi Kotani,
    Analysis of echocardiographic video by dynamic mode decomposition,
    Electronisc and Communications in Japan, 2021;104:65–73
  7. Kenta Shimba, Kiyoshi Kotani, Yasuhiko Jimbo,
    Microfabricated Device to Record Axonal Conduction under Pharmacological Treatment for Functional Evaluation of Axon Ion Channel,
    IEEE Transactions on Biomedical Engineering, Vol. 68, No. 12, 3574-3581, 2021.
  8. Miyu Okamoto, Kenta Shimba, Akihiro Kamono, Kiyoshi Kotani, Yasuhiko Jimbo,
    Initiation and Termination of Reentry-like Activity in Rat Cardiomyocytes Cultured in a Microelectrode Array,
    Biochemical and Biophysical Research Communications, 576, 117-122, 2021
  9. Kenta Shimba, Kiyoshi Kotani, Yasuhiko Jimbo,
    Evaluating Axon Conduction Characteristics of Cultured Sensory Neurons Toward Soft Robot Control,
    Journal of Robotics and Mechatronics, accepted.


  1. Fumina Mori, Keigo Kikuchi, Masato Sugino, Kiyoshi Kotani, Yasuhiko Jimbo,
    Estimation of brain response to multimodal stimuli by index of spatiotemporal locality by magnetoencephalography,
    Electronisc and Communications in Japan, Vol. 103, Issue 11-12, pp. 63-70, 2020
  2. Kotani K, Ogawa Y, Shirasaka S, Akao A, Jimbo Y, Nakao H.,
    Nonlinear phase-amplitude reduction of delay-induced oscillations
    Physical Review Research 2, 033106, 2020
  3. Yoshikai Y., Mori F,Kotani K, Jimbo Y.:
    Computational Study of Desynchronization of Fast-Spiking Interneurons at Macroscopic Gamma Oscillations,
    IEEJ Transactions on electrical and electronic engineering, 15: 1197–1204, 2020


  1. Shimba, K., Chang, C. H., Asahina, T., Moriya, F., Kotani, K., Jimbo, Y, Gladkov A, Antipova O, Pigareva Y, Kolpakov V, Mukhina I, Kazantsev V and Pimashkin A.
    Functional Scaffolding for Brain Implants: Engineered Neuronal Network by Microfabrication and iPSC Technology.
    Frontiers in neuroscience, 13, 890. 2019(Perspective)
  2. I. Yamaguchi, T. Isomura, H. Nakao, Y. Ogawa, Y. Jimbo, K. Kotani
    Suppression of macroscopic oscillations in mixed populations of active and inactive oscillators coupled through lattice Laplacian
    Journal of the Physical Society of Japan 88, 054004, 2019
  3. Shimba K, Sakai K, Iida S, Kotani K, Jimbo Y:
    Long-Term Developmental Process of the Human Cortex Revealed In Vitro by Axon Targeted Recording Using a Microtunnel-Augumented Microelectrode Array
    IEEE Transactions on Biomedical Engineering 66, 2538-2545, 2019
  4. Kinoshita I, Akao A, Shirasaka S, Kotani K, Jimbo Y.
    Analysis of reservoir computing focusing on the spectrum of bistable delayed dynamical systems
    Electron. Comm. Jpn., Vol. 102, Issue 2, pp. 15-20, 2019


  1. Iida S, Shimba K, Sakai K, Kotani K, Jimbo Y
    Synchronous firing patterns of induced pluripotent stem cell-derived cortical neurons depend on the network structure consisting of excitatory and inhibitory neurons
    Biochem. Biophys. Res. Commun., Vol.501, Issue 1,pp. 152-157, 2018
  2. Akao A.,  Ogawa Y., Jimbo Y., Ermentrout B., Kotani K.
    Relationship between the mechanisms of gamma rhythm generation and the magnitude of the macroscopic phase response function in a population of excitatory and inhibitory modified quadratic integrate-and-fire neurons
    Phys. Rev. E, Vol.97, 012209, 2018
  3. Ciba, M., Isomura, T., Jimbo, Y., Bahmer, A., Thielemann, C.
    Spike-contrast: A novel time scale independent and multivariate measure of spike train synchrony
    J. Neurosci. Methods, Vol. 293, pp. 136-143, 2018


  1. Sakai K., Shimba K., Ishizuka K., Yang Z., Oiwa K., Takeuchi A., Kotani K., Jimbo Y.
    Functional innervation of human induced pluripotent stem cell-derived cardiomyocytes by co-culture with sympathetic neurons developed using a microtunnel techniqueBiochem. Biophys. Res. Comm., Vol. 494, pp. 138-143,  2017
  2. Tanaka Y., Kadokura T., Isomura T., Shimba K., Kotani K., Jimbo Y.
    Improvement in pattern separation by regulating neurogenesis in hippocampal culture
    Electron. Comm. Jpn., 100, 9, pp. 3-12, 2017
  3. Sakai K., Shimba K., Kotani K., Jimbo Y.
    A co-culture microtunnel technique demonstrating significant contribution of unmyelinated Schwann cells to acceleration of axonal conduction in Schwann cell-regulated peripheral nerve development
    Integr. Biol., Vol. 8, pp. 678-686, 2017
  4. Tanaka Y., Isomura T., Shimba K., Kotani K., Jimbo Y.
    Neurogenesis enhances response specificity to spatial pattern stimulation in hippocampal cultures
    IEEE Trans. Biomed. Eng., Vol. 64, pp. 2555-2561, 2017
  5. Shimono Y., Yamaguchi I., Ishimatsu K., Akao A., Ogawa Y., Jimbo Y., Kotani K.
    Evaluation of heuristic reductions of a model for the segmentation clock in zebrafish
    IEEJ T. Electr. Electr. , in press, 2017
  6. Ogawa Y., Yamaguchi I., Kotani K., Jimbo Y.
    Estimating the parameters of neural mass models including time delay and nonlinearity using a particle filter
    IEEJ T. Electr. Electr. , Vol. 12, pp. 899-906, 2017
  7. Ogawa Y., Yamaguchi I., Kotani K., Jimbo Y.
    Deriving theoretical phase locking values of a coupled cortico-thalamic neural mass model using center manifold reduction
    J. Comput. Neurosci., Vol. 42, pp. 231-243, 2017


  1. Shimba K., Iida S., Kotani K., Jimbo Y.
    Cell-cycle-dependent Ca2+ transients in human induced pluripotent stem cells revealed by a simultaneous imaging of cell nuclei and intracellular Ca2+ level
    Integr. Biol., Vol. 8, pp. 985-990, 2016
  2. Kato N., Matsuno S. , Tateyama M. , Ogawa Y. , Kotani K. , and Jimbo Y. ,
    Development of a Reassemblable Robot for Automatic Ultrasound Diagnosis, International Journal of Bioelectromagnetism, 18, 38 – 44, 2016
  3. Isomura T, Sakai K., Kotani K., Jimbo Y.
    Linking neuromodulated spike-timing dependent plasticity with the free-energy principle
    Neural comput., Vol. 28, pp. 1859-1888, 2016
  4. Oiwa K., Shimba K., Numata T., Takeuchi A., Kotani K., Jimbo Y.
    A device for co-culturing autonomic neurons and cardiomyocytes using micro-fabrication techniques
    Intrgr. Biol.,  Vol. 8, pp. 341-348, 2016
  5. Shimba K., Sakai K., Kotani K., Jimbo Y.
    Experimental evaluation of activity-dependent changes in axonal conduction delay using a microtunnel device
    NOLTA, Vol. 7, pp. 76-85, 2016


  1. Yoshida L., Kotani K., Jimbo Y.
    Device Fabrication for Creating Multiscale Miniature Neuronal Networks and Spatiotemporal Pattern Analysis of Spontaneous Electrical Activities
    Electron. Comm. Jpn., 98, 2, pp. 43-51, 2015
  2. Shimba K., Sakai K., Takayama Y., Kotani K., Jimbo Y.
    Recording axonal conduction to evaluation the integration of pluripotent cell-derived neurons into a neuronal network
    Biomed. Microdevices, Vol. 17, Article 94, 2015
  3. Isomura T., Kotani K., Jimbo Y.
    Cultured Cortical Neurons Can Perform Blind Source Separation According to the Free-Energy Principle
    PLoS Comput. Biol., Vol. 11, e1004643, 2015
  4. Naito G., Yoshida L., Numata T., Ogawa Y., Kotani K., Jimbo Y.
    Simultaneous Classification of Multiple Motor Imagery and P300 for Increase in Output Information of Brain-Computer Interface
    Electr. Eng. Jpn., Vol. 98,  pp. 47-54, 2015
  5. Isomura T., Shimba K., Takayama Y., Takeuchi A., Kotani K., Jimbo Y.
    Signal transfer within a cultured asymmetric cortical neuron circuit
    J. Neural. Eng., Vol. 12, 066023, 2015
  6. Shimba K., Sakai K., Isomura T., Kotani K., Jimbo Y.
    Axonal conduction slowing induced by spontaneous bursting activity in cortical neurons cultured in a microtunnel device
    Integr. Biol., Vol. 7, pp. 64-72, 2015
  7. Isomura T., Ogawa Y., Kotani K., Jimbo Y.
    Accurate connection strength estimation based on variational Bayes for detecting synaptic plasticity
    Neural. comput., Vol. 27, pp. 819-844, 2015
  8. Numata T., Ogawa Y., Kotani K., Jimbo Y.
    Extraction of response waveforms of heartbeat and blood pressure to swallowing using mixed time domain and respiratory-phase domain analysis
    Method.  Inform. Med., Vol. 23, pp. 179-188, 2015
  9. Saito A., Nakashima Y., Shimba K., Takayama Y., Kotani K., Jimbo Y.
    Modulation of neuronal network activity using magnetic nanoparticle- based astrocytic network integration
    Biomater. Sci., Vol. 8, pp. 1228-1235, 2015


  1. Kotani K., Yamaguchi I., Yoshida L., Jimbo Y., Ermentrout G. B.
    Population dynamics of the modified theta model: macroscopic phase reduction and bifurcation analysis link microscopic neuronal interactions to macroscopic gamma oscillation
    J. Roy. Soc. Interface, Vol. 11, 2014
  2. Ogawa Y., Kotani K., Jimbo Y.
    Relationship between working memory performance and neural activation measured using near-infrared spectroscopy
    Brain Behav., 4, pp. 544–551, 2014
  3. Isomura A., Takeuchi A., Shimba K., Kotani K., Jimbo Y.
    Connection-strength estimation of neuronal networks by fitting for Izhikevich model
    Electr. Eng. Jpn., 187, pp. 42-50, 2014
  4. Saito A., Takayama Y., Moriguchi H., Kotani K., Jimbo Y.
    Induced current-pharmacological split stimulation system for neuronal networks
    IEEE T. Bio-med. Eng., 61, pp. 463-472, 2014
  5. Shimba K., Saito A., Takeuchi A., Takayama Y., Kotani K., Jimbo Y.
    Neural transplantation model using integration co-culture chamber
    Electron. Comm. Jpn., 97, 2, pp. 36-43, 2014
  6. Ikuhiro Yamaguchi, Yutaro Ogawa, Hiroya Nakao, Yasuhiko Jimbo, Kiyoshi Kotani.
    Linear Analysis of the Corticothalamic Model with Time Delay
    Electron. Comm. Jpn., 97, 8, pp. 32-44, 2014


  1. Numata T., Ogawa Y., Yoshida L., Kotani K., Jimbo Y.
    High-accuracy extraction of respiratory sinus arrhythmia with statistical processing using normal distribution
    Electron. Comm. Jpn. 96, pp. 23-32, 2013
  2. Kotani K., Ogawa H., Ogata H., Numata T., Nakazawa K., Jimbo Y.
    Method for evaluation of fractal properties from data with noisy observational errors
    IEEJ T. Electr. Electr. 8, pp. 247-252, 2013
  3. Numata T., Kotani K., Jimbo Y.
    Effect of body motion to respiratory sinus arrhythmia with different timings of respiration
    International Journal of Bioelectromagnetism 15, pp. 47-53, 2013


  1. Takeuchi A., Shimba K., Mori M., Takayama Y., Moriguchi H., Kotani K., Lee J., Noshiro M., Jimbo Y.
    Sympathetic neurons modulate the beat rate of pluripotent cell-derived cardiomyocytes in vitro
    Integr. Biol. 4, pp. 1532-1539, 2012
  2. Ogawa Y., Takeno S., Kotani K., Jimbo Y.
    Analysis of EEG Phase Properties with Pulse and Noise Stimuli in Visual Cortex
    Electron. Commun. Jpn. 95, pp. 58-64, 2012
  3. Kotani K., Yamaguchi I., Ogawa Y., Jimbo Y., Nakao H., Ermentrout G. B.
    Adjoint Method Provides Phase Response Functions for Delay-Induced Oscillations
    Physical review letters 109, 044101, 2012
  4. Takayama Y., Moriguchi H., Kotani K., Suzuki T., Mabuchi K., Jimbo Y.
    Network-wide integration of stem cell-derived neurons and mouse cortical neurons using microfabricated co-culture devices
    Biosystems 107, pp. 1-8, 2012


  1. Yamaguchi I., Ogawa Y., Jimbo Y., Nakao H., Kotani K.
    Reduction theories elucidate the origins of complex biological rhythms generated by interacting delay-induced oscillations
    PLoS ONE 6, e26497, 2011
  2. Takayama Y., Saito A., Moriguchi H., Kotani K., Suzuki T., Mabuchi K., Jimbo Y.
    Simultaneous induction of calcium transients in embryoid bodies using microfabricated electrode substrates
    J. Biosci. Bioeng. 112, pp. 624-629, 2011
  3. Takeuchi A., Moriguchi H., Kotani K., Miwa K., Lee J., Noshiro M., Jimbo Y.
    Development of Spatially-Separated Co-culture System of the Sympathetic Neuron and the Cardiomyocyte
    IEEJ T. Electr. Electr. 6, pp. 151-156, 2011
  4. Saito A., Takayama Y., Moriguchi H., Kotani K., Jimbo Y.
    Effects of Extremely Low Frequency Magnetic Fields on Neuronal Development of P19 Embryonal Carcinoma Cells
    IEEJ Trans. 6, pp. 157-162, 2011
  5. Suzurikawa J., Kanzaki R., Nakao M., Jimbo Y., Takahashi H.
    Optimization of Thin-Film Configuration for Light-Addressable Stimulation Electrode Holdings
    Electron. Commun. Jpn. 94, pp. 61-68, 2011


  1. Tonomura W., Moriguchi H., Jimbo Y., Konishi S.
    Parallel multipoint recording of aligned and cultured neurons on micro channel array toward cellular network analysis
    Biomed. Microdevices 12, pp. 737-743, 2010
  2. Hattori S., Suzurikawa J., Kanzaki R., Jimbo Y., Hamaguchi T., Takahashi H., Nakao M.
    Direction Control of Information Transfer between Neuronal Populations with Asymmetric Three-Dimensional Microstructure
    Electron. Commun. Jpn. 93, pp. 17-25, 2010
  3. Matsuda Y, Sakuma I, Jimbo Y, Kobayashi E, Arafune T, Isomura T
    Emotion recognition of finger BRAILLE
    Int. J. Innov. Comp. Info. Control 6, pp. 1363-1377, 2010


  1. Takayama Y., Moriguchi H., Kotani K., Jimbo. Y.
    Spontaneous calcium oscillations in cultured cortical networks during development
    IEEE Trans. BME 56, pp. 2649-2956, 2009
  2. Takayama Y, Saito A., Moriguchi H., Jimbo. Y.
    Ensemble Stimulation of Embryoid Bodies using Substrate-Embedded Electrodes
    IEEJ Trans. 4, pp. 734-735, 2009


  1. Kotani K., Takamasu K., Jimbo Y, Yamamoto Y.
    Postural-induced phase shift of respiratory sinus arrhythmia and blood pressure variations – insight from respiratory-phase domain analysis
    Am. J.Physiol. 294, pp. H1481-H1489, 2008


  1. Jimbo Y.
    MEA-based recording of neuronal activity in vitro
    Arch. Ital. Biol. 145, pp. 289-297, 2007